Alot of the contributions still in use that provide some sort of WYSIWYG editor to the admin and/or frontend users uses a app called HTMLAREA with a wide open security flaw. It rather depends on how you secure your admin or if your adding a wysiwyg to the front end but inside the HTMLAREA there is a php file called file.php that allows read/write/delete of files and folders anywhere that the php user(typically the apache user account) has access too. Common directories for this are catalog/images/ among others. If you have HTMLAREA and files/folders that are chmod 777 or if you php runs under the same account the owns the files/folders you are vunerable to this exploit!!!
The means of fixing this exploit are dependent upon your setup. If you only have admin HTMLAREA and you use a a solid .htaccess scheme then you may be fine. If your using HTMLAREA in admin and useing the multiadmin contrib for mutlitple admin logins or any other code based authentication you are probably open!
I do know that alot of still used contributions use this HTMLAREA but am unable to really do a complete listing for you guys. Basically if you have a WYSIWYG editor(graphical editor) for any portion of your site look for a directory called htmlarea on your site and inside it is a popups/files.php this is the culprit. One solution that keeps out a certain type of hack is to limit the filetypes it accepts and writes but this still opens you for maliscious damage such as removal of file/folders.


Are you sure you have htmlarea installed?